SNP Profiles of IMC 54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	TT	CC	GG	TT	AT	CC	CT	AG	GT	AG	TT	AC
1._RUQ_11	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
2._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
3._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
4._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
5._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
6._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
7._RUQ_11	_	_	_	_	_	_	_	_	_	_	_	AG	_	_
8._GC-04-018-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
9._GC-04-018-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
10._GC-04-018-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
11._GC-04-018-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
12._GC-04-018-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
13._IMC_54	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
14._GC-04-18-1-18	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	AA	CC	CC	AG	GG	AT	AA	CC	CT	AG	CC
1._RUQ_11	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
2._IMC_54	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
3._IMC_54	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
4._IMC_54	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
5._IMC_54	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
6._IMC_54	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
7._RUQ_11	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
8._GC-04-018-1-18	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
9._GC-04-018-1-18	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
10._GC-04-018-1-18	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
11._GC-04-018-1-18	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
12._GC-04-018-1-18	AG	_	_	_	_	CC	_	GG	_	AA	CC	_	_	_
13._IMC_54	_	_	_	_	_	CC	_	GG	_	AC	_	_	_	_
14._GC-04-18-1-18	AG	_	_	_	_	CC	_	GG	_	AA	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CG	TT	GG	GG	CT	TT	AC	AA	TT	CC	GG	CG	AA
1._RUQ_11	_	_	TT	GG	GG	_	_	AC	_	_	CC	-	_	AA
2._IMC_54	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
3._IMC_54	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
4._IMC_54	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
5._IMC_54	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
6._IMC_54	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
7._RUQ_11	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AA
8._GC-04-018-1-18	AA	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
9._GC-04-018-1-18	AA	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
10._GC-04-018-1-18	AA	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
11._GC-04-018-1-18	AA	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
12._GC-04-018-1-18	AA	_	CC	GG	GG	_	_	AC	_	GG	CC	GG	_	AA
13._IMC_54	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AA
14._GC-04-18-1-18	_	_	_	CC	GG	_	_	AC	_	CC	GG	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AA	CC	GG	CT	CC	GG	AA	TT	GG	AT	AA	AG
1._RUQ_11	CC	_	_	_	_	_	_	_	_	TT	_	_	_	_
2._IMC_54	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
3._IMC_54	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
4._IMC_54	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
5._IMC_54	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
6._IMC_54	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
7._RUQ_11	_	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
8._GC-04-018-1-18	CC	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
9._GC-04-018-1-18	CC	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
10._GC-04-018-1-18	CC	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
11._GC-04-018-1-18	CC	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
12._GC-04-018-1-18	CC	_	_	_	GG	_	CC	_	_	TT	_	_	_	_
13._IMC_54	_	_	_	_	GG	_	_	_	_	GT	_	_	_	_
14._GC-04-18-1-18	_	_	_	_	GG	_	_	_	_	AA	_	_	_	_

	57	58	59
_Input profile	CG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_11	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_11	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-04-018-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-018-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-018-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-018-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-018-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._IMC_54	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-04-18-1-18	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_54 RUQ_11

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._IMC_54 RUQ_11

identical
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._IMC_54

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

3._IMC_54

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

4._IMC_54

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

5._IMC_54

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

6._IMC_54

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_54 RUQ_11

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._IMC_54 GC-04-018-1-18

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._IMC_54 GC-04-018-1-18

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._IMC_54 GC-04-018-1-18

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

11._IMC_54 GC-04-018-1-18

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

12._IMC_54 GC-04-018-1-18

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._IMC_54

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

14._IMC_54 GC-04-18-1-18

70.6 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527